Detailed information of SNP:
|
SNP ID:
sf0417844197(Gbrowse)
Chromosome: chr04 Position: 17844197 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1347 | 94.65% | 5.35% |
| All Indica | 750 | 99.87% | 0.13% |
| All Japonica | 479 | 86.43% | 13.57% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 335 | 100.00% | 0.00% |
| Indica II | 209 | 99.52% | 0.48% |
| Indica Intermediate | 206 | 100.00% | 0.00% |
| Temperate Japonica | 322 | 82.92% | 17.08% |
| Tropical Japonica | 89 | 92.13% | 7.87% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417844197 | T->G | INTERGENIC | None |