Detailed information of SNP:
|
SNP ID:
sf0417897664(Gbrowse)
Chromosome: chr04 Position: 17897664 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 54.84% | 45.16% |
| All Indica | 799 | 27.03% | 72.97% |
| All Japonica | 493 | 96.96% | 3.04% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 32.53% | 67.47% |
| Indica II | 213 | 28.17% | 71.83% |
| Indica Intermediate | 211 | 16.11% | 83.89% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 91 | 87.91% | 12.09% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417897664 | G->A | LOC_Os04g30270(LOC_Os04g30270.1) | INTRON |