Detailed information of SNP:
|
SNP ID:
sf0417897848(Gbrowse)
Chromosome: chr04 Position: 17897848 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 55.16% | 44.84% |
| All Indica | 798 | 27.57% | 72.43% |
| All Japonica | 493 | 96.96% | 3.04% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 374 | 33.42% | 66.58% |
| Indica II | 213 | 28.17% | 71.83% |
| Indica Intermediate | 211 | 16.59% | 83.41% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 85.87% | 14.13% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417897848 | T->A | LOC_Os04g30270(LOC_Os04g30270.1) | INTRON |