Detailed information of SNP:
|
SNP ID:
sf0417899388(Gbrowse)
Chromosome: chr04 Position: 17899388 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1402 | 93.94% | 6.06% |
| All Indica | 796 | 98.87% | 1.13% |
| All Japonica | 483 | 86.54% | 13.46% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 88 | 52.27% | 47.73% |
| Japonica Intermediate | 60 | 71.67% | 28.33% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417899388 | A->G | LOC_Os04g30270(LOC_Os04g30270.1) | INTRON |