Detailed information of SNP:
|
SNP ID:
sf0417899693(Gbrowse)
Chromosome: chr04 Position: 17899693 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 93.89% | 6.11% |
| All Indica | 797 | 98.75% | 1.25% |
| All Japonica | 488 | 86.89% | 13.11% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 99.73% | 0.27% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 89 | 52.81% | 47.19% |
| Japonica Intermediate | 64 | 71.88% | 28.12% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417899693 | T->A | LOC_Os04g30270(LOC_Os04g30270.1) | Non-Synonymous SNP |