Detailed information of SNP:
|
SNP ID:
sf0417899792(Gbrowse)
Chromosome: chr04 Position: 17899792 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 94.15% | 5.85% |
| All Indica | 796 | 98.87% | 1.13% |
| All Japonica | 482 | 87.14% | 12.86% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 87 | 50.57% | 49.43% |
| Japonica Intermediate | 61 | 75.41% | 24.59% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417899792 | G->A | LOC_Os04g30270(LOC_Os04g30270.1) | Non-Synonymous SNP |