Detailed information of SNP:
|
SNP ID:
sf0417900562(Gbrowse)
Chromosome: chr04 Position: 17900562 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 92.00% | 8.00% |
| All Indica | 798 | 99.00% | 1.00% |
| All Japonica | 492 | 81.30% | 18.70% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 35.11% | 64.89% |
| Japonica Intermediate | 63 | 61.90% | 38.10% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417900562 | T->C | LOC_Os04g30270(LOC_Os04g30270.1) | Non-Synonymous SNP |