Detailed information of SNP:
|
SNP ID:
sf0417907530(Gbrowse)
Chromosome: chr04 Position: 17907530 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 95.46% | 4.54% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 489 | 88.34% | 11.66% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 86 | 69.77% | 30.23% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417907530 | G->A | LOC_Os04g30280(LOC_Os04g30280.1) | INTRON |