Detailed information of SNP:
|
SNP ID:
sf0417909769(Gbrowse)
Chromosome: chr04 Position: 17909769 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 95.61% | 4.39% |
| All Indica | 795 | 98.87% | 1.13% |
| All Japonica | 496 | 89.31% | 10.69% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 208 | 98.56% | 1.44% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 93 | 74.19% | 25.81% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417909769 | C->T | LOC_Os04g30280(LOC_Os04g30280.1) | INTRON |