Detailed information of SNP:
|
SNP ID:
sf0417912756(Gbrowse)
Chromosome: chr04 Position: 17912756 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 51.38% | 48.62% |
| All Indica | 797 | 26.60% | 73.40% |
| All Japonica | 493 | 88.03% | 11.97% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 33.07% | 66.93% |
| Indica II | 211 | 26.07% | 73.93% |
| Indica Intermediate | 211 | 15.64% | 84.36% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 91 | 68.13% | 31.87% |
| Japonica Intermediate | 67 | 65.67% | 34.33% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417912756 | G->A | INTERGENIC | None |