Detailed information of SNP:
|
SNP ID:
sf0417914887(Gbrowse)
Chromosome: chr04 Position: 17914887 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 51.85% | 48.15% |
| All Indica | 792 | 27.53% | 72.47% |
| All Japonica | 488 | 87.50% | 12.50% |
| Aus | 66 | 65.15% | 34.85% |
| Indica I | 375 | 33.87% | 66.13% |
| Indica II | 209 | 26.32% | 73.68% |
| Indica Intermediate | 208 | 17.31% | 82.69% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 85 | 64.71% | 35.29% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417914887 | A->T | LOC_Os04g30290(LOC_Os04g30290.1) | Non-Synonymous SNP |