Detailed information of SNP:
|
SNP ID:
sf0417915629(Gbrowse)
Chromosome: chr04 Position: 17915629 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1383 | 56.47% | 43.53% |
| All Indica | 792 | 31.82% | 68.18% |
| All Japonica | 470 | 94.68% | 5.32% |
| Aus | 66 | 66.67% | 33.33% |
| Indica I | 370 | 37.03% | 62.97% |
| Indica II | 213 | 32.86% | 67.14% |
| Indica Intermediate | 209 | 21.53% | 78.47% |
| Temperate Japonica | 331 | 99.40% | 0.60% |
| Tropical Japonica | 79 | 87.34% | 12.66% |
| Japonica Intermediate | 60 | 78.33% | 21.67% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417915629 | T->C | LOC_Os04g30290(LOC_Os04g30290.1) | Non-Synonymous SNP |