Detailed information of SNP:
|
SNP ID:
sf0417923273(Gbrowse)
Chromosome: chr04 Position: 17923273 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 52.84% | 47.16% |
| All Indica | 792 | 27.40% | 72.60% |
| All Japonica | 496 | 88.71% | 11.29% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 373 | 32.98% | 67.02% |
| Indica II | 212 | 27.36% | 72.64% |
| Indica Intermediate | 207 | 17.39% | 82.61% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 93 | 70.97% | 29.03% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417923273 | C->T | INTERGENIC | None |