Detailed information of SNP:
|
SNP ID:
sf0417926529(Gbrowse)
Chromosome: chr04 Position: 17926529 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 54.47% | 45.53% |
| All Indica | 793 | 27.74% | 72.26% |
| All Japonica | 493 | 94.93% | 5.07% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 372 | 34.41% | 65.59% |
| Indica II | 210 | 27.14% | 72.86% |
| Indica Intermediate | 211 | 16.59% | 83.41% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 79.12% | 20.88% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417926529 | C->T | LOC_Os04g30320(LOC_Os04g30320.1) | UTR_3_PRIME |