Detailed information of SNP:
|
SNP ID:
sf0417964414(Gbrowse)
Chromosome: chr04 Position: 17964414 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1318 | 96.43% | 3.57% |
| All Indica | 789 | 96.45% | 3.55% |
| All Japonica | 416 | 96.15% | 3.85% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 97.31% | 2.69% |
| Indica II | 208 | 95.67% | 4.33% |
| Indica Intermediate | 209 | 95.69% | 4.31% |
| Temperate Japonica | 326 | 100.00% | 0.00% |
| Tropical Japonica | 50 | 74.00% | 26.00% |
| Japonica Intermediate | 40 | 92.50% | 7.50% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 34 | 97.06% | 2.94% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0417964414 | G->A | INTERGENIC | None |