Detailed information of SNP:
|
SNP ID:
sf0418070560(Gbrowse)
Chromosome: chr04 Position: 18070560 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 50.56% | 49.44% |
| All Indica | 799 | 71.46% | 28.54% |
| All Japonica | 497 | 21.33% | 78.67% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 375 | 62.40% | 37.60% |
| Indica II | 213 | 74.65% | 25.35% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 5.97% | 94.03% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0418070560 | A->G | INTERGENIC | None |