Detailed information of SNP:
|
SNP ID:
sf0418134346(Gbrowse)
Chromosome: chr04 Position: 18134346 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1396 | 96.20% | 3.80% |
| All Indica | 780 | 94.87% | 5.13% |
| All Japonica | 495 | 98.79% | 1.21% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 367 | 95.10% | 4.90% |
| Indica II | 207 | 95.17% | 4.83% |
| Indica Intermediate | 206 | 94.17% | 5.83% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0418134346 | A->G | LOC_Os04g30650(LOC_Os04g30650.1) | Non-Synonymous SNP |