Detailed information of SNP:
|
SNP ID:
sf0418136896(Gbrowse)
Chromosome: chr04 Position: 18136896 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 96.35% | 3.65% |
| All Indica | 786 | 96.31% | 3.69% |
| All Japonica | 487 | 95.48% | 4.52% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 95.43% | 4.57% |
| Indica II | 209 | 97.13% | 2.87% |
| Indica Intermediate | 205 | 97.07% | 2.93% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 89 | 83.15% | 16.85% |
| Japonica Intermediate | 64 | 96.88% | 3.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0418136896 | G->T | LOC_Os04g30650(LOC_Os04g30650.1) | Non-Synonymous SNP |