Detailed information of SNP:
|
SNP ID:
sf0418224776(Gbrowse)
Chromosome: chr04 Position: 18224776 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 69.37% | 30.63% |
| All Indica | 797 | 53.07% | 46.93% |
| All Japonica | 497 | 91.35% | 8.65% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 65.24% | 34.76% |
| Indica II | 213 | 45.54% | 54.46% |
| Indica Intermediate | 210 | 39.05% | 60.95% |
| Temperate Japonica | 335 | 88.06% | 11.94% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0418224776 | C->T | INTERGENIC | None |