Detailed information of SNP:



SNP ID: sf0418297727(Gbrowse)

Chromosome: chr04

Position: 18297727
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 97.96% 2.04%
All Indica799 100.00% 0.00%
All Japonica497 94.37% 5.63%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 79.79% 20.21%
Japonica Intermediate68 88.24% 11.76%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0418297727 C->T LOC_Os04g30910(LOC_Os04g30910.3) UTR_5_PRIME
sf0418297727 C->T LOC_Os04g30910(LOC_Os04g30910.1) INTRON
sf0418297727 C->T LOC_Os04g30910(LOC_Os04g30910.2) INTRON