Detailed information of SNP:



SNP ID: sf0418403384(Gbrowse)

Chromosome: chr04

Position: 18403384
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1412 87.54% 12.46%
All Indica798 97.74% 2.26%
All Japonica491 70.26% 29.74%
Aus67 100.00% 0.00%
Indica I375 98.93% 1.07%
Indica II213 96.24% 3.76%
Indica Intermediate210 97.14% 2.86%
Temperate Japonica334 92.22% 7.78%
Tropical Japonica89 13.48% 86.52%
Japonica Intermediate68 36.76% 63.24%
Group VI/Aromatic14 71.43% 28.57%
Intermediate42 80.95% 19.05%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0418403384 T->C INTERGENIC None