Detailed information of SNP:
|
SNP ID:
sf0418403384(Gbrowse)
Chromosome: chr04 Position: 18403384 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 87.54% | 12.46% |
| All Indica | 798 | 97.74% | 2.26% |
| All Japonica | 491 | 70.26% | 29.74% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 334 | 92.22% | 7.78% |
| Tropical Japonica | 89 | 13.48% | 86.52% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0418403384 | T->C | INTERGENIC | None |