Detailed information of SNP:
|
SNP ID:
sf0418424090(Gbrowse)
Chromosome: chr04 Position: 18424090 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1381 | 89.36% | 10.64% |
| All Indica | 782 | 96.68% | 3.32% |
| All Japonica | 480 | 75.00% | 25.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 361 | 95.57% | 4.43% |
| Indica II | 211 | 96.68% | 3.32% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 321 | 64.49% | 35.51% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0418424090 | A->G | INTERGENIC | None |