Detailed information of SNP:
|
SNP ID:
sf0418426880(Gbrowse)
Chromosome: chr04 Position: 18426880 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 81.86% | 18.14% |
| All Indica | 798 | 86.72% | 13.28% |
| All Japonica | 496 | 71.77% | 28.23% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 75.73% | 24.27% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 334 | 61.38% | 38.62% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0418426880 | T->C | INTERGENIC | None |