Detailed information of SNP:
|
SNP ID:
sf0418587523(Gbrowse)
Chromosome: chr04 Position: 18587523 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 50.14% | 49.86% |
| All Indica | 799 | 20.28% | 79.72% |
| All Japonica | 496 | 97.38% | 2.62% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 20.00% | 80.00% |
| Indica II | 213 | 27.23% | 72.77% |
| Indica Intermediate | 211 | 13.74% | 86.26% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0418587523 | G->A | INTERGENIC | None |