Detailed information of SNP:
|
SNP ID:
sf0418590384(Gbrowse)
Chromosome: chr04 Position: 18590384 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 58.93% | 41.07% |
| All Indica | 798 | 81.95% | 18.05% |
| All Japonica | 497 | 24.75% | 75.25% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 374 | 81.02% | 18.98% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 31.94% | 68.06% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0418590384 | C->T | INTERGENIC | None |