Detailed information of SNP:
|
SNP ID:
sf0418625142(Gbrowse)
Chromosome: chr04 Position: 18625142 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1334 | 95.28% | 4.72% |
| All Indica | 771 | 95.85% | 4.15% |
| All Japonica | 441 | 93.20% | 6.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 363 | 93.11% | 6.89% |
| Indica II | 206 | 99.03% | 0.97% |
| Indica Intermediate | 202 | 97.52% | 2.48% |
| Temperate Japonica | 294 | 92.86% | 7.14% |
| Tropical Japonica | 88 | 100.00% | 0.00% |
| Japonica Intermediate | 59 | 84.75% | 15.25% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0418625142 | C->T | INTERGENIC | None |