Detailed information of SNP:
|
SNP ID:
sf0418630796(Gbrowse)
Chromosome: chr04 Position: 18630796 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 72.39% | 27.61% |
| All Indica | 789 | 57.03% | 42.97% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 371 | 30.46% | 69.54% |
| Indica II | 208 | 87.02% | 12.98% |
| Indica Intermediate | 210 | 74.29% | 25.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0418630796 | T->C | INTERGENIC | None |