Detailed information of SNP:
|
SNP ID:
sf0418632189(Gbrowse)
Chromosome: chr04 Position: 18632189 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1394 | 67.36% | 32.64% |
| All Indica | 776 | 48.20% | 51.80% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 374 | 24.87% | 75.13% |
| Indica II | 206 | 75.24% | 24.76% |
| Indica Intermediate | 196 | 64.29% | 35.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0418632189 | T->C | INTERGENIC | None |