Detailed information of SNP:
|
SNP ID:
sf0418672737(Gbrowse)
Chromosome: chr04 Position: 18672737 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 83.10% | 16.90% |
| All Indica | 791 | 74.59% | 25.41% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 53.12% | 46.88% |
| Indica I | 370 | 60.00% | 40.00% |
| Indica II | 212 | 90.09% | 9.91% |
| Indica Intermediate | 209 | 84.69% | 15.31% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0418672737 | C->T | INTERGENIC | None |