Detailed information of SNP:
|
SNP ID:
sf0418698234(Gbrowse)
Chromosome: chr04 Position: 18698234 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 68.10% | 31.90% |
| All Indica | 797 | 45.29% | 54.71% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 373 | 59.25% | 40.75% |
| Indica II | 213 | 36.62% | 63.38% |
| Indica Intermediate | 211 | 29.38% | 70.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0418698234 | A->T | LOC_Os04g31550(LOC_Os04g31550.1) | UTR_3_PRIME |