Detailed information of SNP:
|
SNP ID:
sf0418759781(Gbrowse)
Chromosome: chr04 Position: 18759781 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 54.12% | 45.88% |
| All Indica | 799 | 24.28% | 75.72% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 22.93% | 77.07% |
| Indica II | 213 | 30.52% | 69.48% |
| Indica Intermediate | 211 | 20.38% | 79.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0418759781 | G->A | INTERGENIC | None |