Detailed information of SNP:
|
SNP ID:
sf0418768320(Gbrowse)
Chromosome: chr04 Position: 18768320 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 53.92% | 46.08% |
| All Indica | 798 | 24.06% | 75.94% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 54.55% | 45.45% |
| Indica I | 375 | 22.93% | 77.07% |
| Indica II | 213 | 30.52% | 69.48% |
| Indica Intermediate | 210 | 19.52% | 80.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0418768320 | T->C | INTERGENIC | None |