Detailed information of SNP:
|
SNP ID:
sf0418803405(Gbrowse)
Chromosome: chr04 Position: 18803405 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 50.94% | 49.06% |
| All Indica | 787 | 54.51% | 45.49% |
| All Japonica | 471 | 40.55% | 59.45% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 371 | 66.58% | 33.42% |
| Indica II | 207 | 25.60% | 74.40% |
| Indica Intermediate | 209 | 61.72% | 38.28% |
| Temperate Japonica | 320 | 49.06% | 50.94% |
| Tropical Japonica | 87 | 21.84% | 78.16% |
| Japonica Intermediate | 64 | 23.44% | 76.56% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 37.50% | 62.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0418803405 | A->G | INTERGENIC | None |