Detailed information of SNP:
|
SNP ID:
sf0418924008(Gbrowse)
Chromosome: chr04 Position: 18924008 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1361 | 92.80% | 7.20% |
| All Indica | 743 | 88.43% | 11.57% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 84.62% | 15.38% |
| Indica I | 347 | 88.18% | 11.82% |
| Indica II | 208 | 96.63% | 3.37% |
| Indica Intermediate | 188 | 79.79% | 20.21% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0418924008 | G->A | INTERGENIC | None |