Detailed information of SNP:
|
SNP ID:
sf0418946462(Gbrowse)
Chromosome: chr04 Position: 18946462 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 70.13% | 29.87% |
| All Indica | 796 | 52.14% | 47.86% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 375 | 41.87% | 58.13% |
| Indica II | 211 | 77.25% | 22.75% |
| Indica Intermediate | 210 | 45.24% | 54.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0418946462 | A->G | INTERGENIC | None |