Detailed information of SNP:
|
SNP ID:
sf0419031705(Gbrowse)
Chromosome: chr04 Position: 19031705 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 68.22% | 31.78% |
| All Indica | 799 | 46.93% | 53.07% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 49.33% | 50.67% |
| Indica II | 213 | 52.11% | 47.89% |
| Indica Intermediate | 211 | 37.44% | 62.56% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419031705 | A->G | INTERGENIC | None |