Detailed information of SNP:
|
SNP ID:
sf0419033043(Gbrowse)
Chromosome: chr04 Position: 19033043 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1246 | 94.14% | 5.86% |
| All Indica | 761 | 92.64% | 7.36% |
| All Japonica | 386 | 95.85% | 4.15% |
| Aus | 55 | 100.00% | 0.00% |
| Indica I | 357 | 97.20% | 2.80% |
| Indica II | 198 | 85.86% | 14.14% |
| Indica Intermediate | 206 | 91.26% | 8.74% |
| Temperate Japonica | 279 | 94.62% | 5.38% |
| Tropical Japonica | 64 | 100.00% | 0.00% |
| Japonica Intermediate | 43 | 97.67% | 2.33% |
| Group VI/Aromatic | 10 | 100.00% | 0.00% |
| Intermediate | 34 | 97.06% | 2.94% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419033043 | A->T | INTERGENIC | None |