Detailed information of SNP:
|
SNP ID:
sf0419044555(Gbrowse)
Chromosome: chr04 Position: 19044555 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 62.41% | 37.59% |
| All Indica | 798 | 79.45% | 20.55% |
| All Japonica | 497 | 36.82% | 63.18% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 81.87% | 18.13% |
| Indica II | 212 | 73.11% | 26.89% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 52.54% | 47.46% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419044555 | C->A | INTERGENIC | None |