Detailed information of SNP:
|
SNP ID:
sf0419045948(Gbrowse)
Chromosome: chr04 Position: 19045948 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 62.47% | 37.53% |
| All Indica | 798 | 79.45% | 20.55% |
| All Japonica | 494 | 36.84% | 63.16% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 81.87% | 18.13% |
| Indica II | 212 | 73.58% | 26.42% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 332 | 52.71% | 47.29% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419045948 | A->T | INTERGENIC | None |