Detailed information of SNP:
|
SNP ID:
sf0419046879(Gbrowse)
Chromosome: chr04 Position: 19046879 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 62.83% | 37.17% |
| All Indica | 798 | 79.70% | 20.30% |
| All Japonica | 497 | 37.63% | 62.37% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 81.60% | 18.40% |
| Indica II | 212 | 74.53% | 25.47% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 53.73% | 46.27% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419046879 | C->T | INTERGENIC | None |