Detailed information of SNP:
|
SNP ID:
sf0419052570(Gbrowse)
Chromosome: chr04 Position: 19052570 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 96.01% | 3.99% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 489 | 94.27% | 5.73% |
| Aus | 64 | 70.31% | 29.69% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 99.70% | 0.30% |
| Tropical Japonica | 89 | 80.90% | 19.10% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419052570 | G->A | LOC_Os04g32050(LOC_Os04g32050.1) | Non-Synonymous SNP |
| sf0419052570 | G->A | LOC_Os04g32050(LOC_Os04g32050.2) | Synonymous |