Detailed information of SNP:
|
SNP ID:
sf0419059037(Gbrowse)
Chromosome: chr04 Position: 19059037 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 51.45% | 48.55% |
| All Indica | 797 | 21.33% | 78.67% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 374 | 18.18% | 81.82% |
| Indica II | 213 | 28.64% | 71.36% |
| Indica Intermediate | 210 | 19.52% | 80.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419059037 | A->G | LOC_Os04g32060(LOC_Os04g32060.2) | Non-Synonymous SNP |
| sf0419059037 | A->G | LOC_Os04g32060(LOC_Os04g32060.1) | Non-Synonymous SNP |