Detailed information of SNP:
|
SNP ID:
sf0419063523(Gbrowse)
Chromosome: chr04 Position: 19063523 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 63.86% | 36.14% |
| All Indica | 798 | 80.58% | 19.42% |
| All Japonica | 490 | 38.37% | 61.63% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 374 | 82.35% | 17.65% |
| Indica II | 213 | 74.65% | 25.35% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 332 | 54.22% | 45.78% |
| Tropical Japonica | 91 | 2.20% | 97.80% |
| Japonica Intermediate | 67 | 8.96% | 91.04% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419063523 | A->T | INTERGENIC | None |