Detailed information of SNP:
|
SNP ID:
sf0419075060(Gbrowse)
Chromosome: chr04 Position: 19075060 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 64.32% | 35.68% |
| All Indica | 798 | 81.83% | 18.17% |
| All Japonica | 497 | 38.03% | 61.97% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 83.20% | 16.80% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 210 | 84.29% | 15.71% |
| Temperate Japonica | 335 | 54.33% | 45.67% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419075060 | G->A | INTERGENIC | None |