Detailed information of SNP:
|
SNP ID:
sf0419077812(Gbrowse)
Chromosome: chr04 Position: 19077812 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 55.26% | 44.74% |
| All Indica | 797 | 25.97% | 74.03% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 374 | 18.98% | 81.02% |
| Indica II | 212 | 37.74% | 62.26% |
| Indica Intermediate | 211 | 26.54% | 73.46% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419077812 | G->A | INTERGENIC | None |