Detailed information of SNP:
|
SNP ID:
sf0419079977(Gbrowse)
Chromosome: chr04 Position: 19079977 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 62.45% | 37.55% |
| All Indica | 790 | 80.51% | 19.49% |
| All Japonica | 494 | 37.85% | 62.15% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 374 | 83.69% | 16.31% |
| Indica II | 206 | 73.30% | 26.70% |
| Indica Intermediate | 210 | 81.90% | 18.10% |
| Temperate Japonica | 333 | 53.45% | 46.55% |
| Tropical Japonica | 93 | 3.23% | 96.77% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419079977 | T->C | INTERGENIC | None |