Detailed information of SNP:
|
SNP ID:
sf0419080131(Gbrowse)
Chromosome: chr04 Position: 19080131 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1315 | 57.03% | 42.97% |
| All Indica | 784 | 85.84% | 14.16% |
| All Japonica | 415 | 3.13% | 96.87% |
| Aus | 64 | 73.44% | 26.56% |
| Indica I | 367 | 91.28% | 8.72% |
| Indica II | 208 | 76.92% | 23.08% |
| Indica Intermediate | 209 | 85.17% | 14.83% |
| Temperate Japonica | 280 | 3.93% | 96.07% |
| Tropical Japonica | 76 | 1.32% | 98.68% |
| Japonica Intermediate | 59 | 1.69% | 98.31% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 38 | 44.74% | 55.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419080131 | T->C | INTERGENIC | None |