Detailed information of SNP:
|
SNP ID:
sf0419089446(Gbrowse)
Chromosome: chr04 Position: 19089446 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1394 | 92.04% | 7.96% |
| All Indica | 791 | 96.84% | 3.16% |
| All Japonica | 482 | 87.97% | 12.03% |
| Aus | 66 | 74.24% | 25.76% |
| Indica I | 368 | 93.48% | 6.52% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 327 | 97.25% | 2.75% |
| Tropical Japonica | 88 | 61.36% | 38.64% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419089446 | T->C | INTERGENIC | None |