Detailed information of SNP:
|
SNP ID:
sf0419093100(Gbrowse)
Chromosome: chr04 Position: 19093100 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 65.37% | 34.63% |
| All Indica | 798 | 82.58% | 17.42% |
| All Japonica | 496 | 39.31% | 60.69% |
| Aus | 66 | 72.73% | 27.27% |
| Indica I | 374 | 82.62% | 17.38% |
| Indica II | 213 | 78.40% | 21.60% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 334 | 55.09% | 44.91% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419093100 | C->T | INTERGENIC | None |