Detailed information of SNP:
|
SNP ID:
sf0419094615(Gbrowse)
Chromosome: chr04 Position: 19094615 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 64.70% | 35.30% |
| All Indica | 798 | 82.46% | 17.54% |
| All Japonica | 489 | 37.42% | 62.58% |
| Aus | 66 | 71.21% | 28.79% |
| Indica I | 374 | 82.62% | 17.38% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 328 | 53.05% | 46.95% |
| Tropical Japonica | 93 | 3.23% | 96.77% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0419094615 | A->G | INTERGENIC | None |